f3b4405cc14960bf…
Created Jul 22, 202613 fields1 collection using this schema
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Fields
| Name | Type | Info |
|---|---|---|
| gbifKey | integer | |
| isRefSeq | boolean | |
| accession | string | |
| contigN50 | integer | |
| ncbiTaxId | integer | |
| queryName | string | |
| submitter | string | |
| gbifTaxonId | string | → Taxon |
| releaseDate | string | |
| assemblyName | string | |
| organismName | string | |
| assemblyLevel | string | |
| refseqCategory | string |
JSON Schema
{
"type": "object",
"required": [
"accession",
"gbifKey"
],
"properties": {
"gbifKey": {
"type": "integer",
"description": "GBIF backbone key of the threatened species this assembly was matched to. Join key."
},
"isRefSeq": {
"type": "boolean"
},
"accession": {
"type": "string",
"description": "NCBI assembly accession (GCF_* for RefSeq, GCA_* for GenBank)."
},
"contigN50": {
"type": "integer"
},
"ncbiTaxId": {
"type": "integer"
},
"queryName": {
"type": "string",
"description": "The GBIF canonical name used to query NCBI for this assembly."
},
"submitter": {
"type": "string"
},
"gbifTaxonId": {
"type": "string",
"x-ref-type": "Taxon",
"description": "Reference to the reconciling record in the gbif-backbone collection."
},
"releaseDate": {
"type": "string"
},
"assemblyName": {
"type": "string"
},
"organismName": {
"type": "string"
},
"assemblyLevel": {
"type": "string",
"description": "Complete Genome, Chromosome, Scaffold, or Contig."
},
"refseqCategory": {
"type": "string",
"description": "reference genome, representative genome, or absent (GenBank-only)."
}
}
}Used by 1 collection · 2 versions
reviverestore/ncbi-assembliesas
Assembly · 2 versionsFull hash:f3b4405cc14960bff55fbbf8ef95bb4742b5658d76fe7200d64c7ee03bde6bf4
ID:9b59e3ed-7ce7-446f-98b9-347da7b431b3