f3b4405cc14960bf…

Created Jul 22, 202613 fields1 collection using this schema

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Fields

NameTypeInfo
gbifKeyinteger
isRefSeqboolean
accessionstring
contigN50integer
ncbiTaxIdinteger
queryNamestring
submitterstring
gbifTaxonIdstring
→ Taxon
releaseDatestring
assemblyNamestring
organismNamestring
assemblyLevelstring
refseqCategorystring

JSON Schema

{
  "type": "object",
  "required": [
    "accession",
    "gbifKey"
  ],
  "properties": {
    "gbifKey": {
      "type": "integer",
      "description": "GBIF backbone key of the threatened species this assembly was matched to. Join key."
    },
    "isRefSeq": {
      "type": "boolean"
    },
    "accession": {
      "type": "string",
      "description": "NCBI assembly accession (GCF_* for RefSeq, GCA_* for GenBank)."
    },
    "contigN50": {
      "type": "integer"
    },
    "ncbiTaxId": {
      "type": "integer"
    },
    "queryName": {
      "type": "string",
      "description": "The GBIF canonical name used to query NCBI for this assembly."
    },
    "submitter": {
      "type": "string"
    },
    "gbifTaxonId": {
      "type": "string",
      "x-ref-type": "Taxon",
      "description": "Reference to the reconciling record in the gbif-backbone collection."
    },
    "releaseDate": {
      "type": "string"
    },
    "assemblyName": {
      "type": "string"
    },
    "organismName": {
      "type": "string"
    },
    "assemblyLevel": {
      "type": "string",
      "description": "Complete Genome, Chromosome, Scaffold, or Contig."
    },
    "refseqCategory": {
      "type": "string",
      "description": "reference genome, representative genome, or absent (GenBank-only)."
    }
  }
}

Used by 1 collection · 2 versions

Full hash:f3b4405cc14960bff55fbbf8ef95bb4742b5658d76fe7200d64c7ee03bde6bf4

ID:9b59e3ed-7ce7-446f-98b9-347da7b431b3